DOE JGI Metagenome Workflow
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چکیده
منابع مشابه
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the ass...
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s received after January 24, 2005 Metagenome Analysis of Contaminated Sediments at the DOE Hanford Site Natalia Maltsev1, Tanuja Bompada1, Banu Gopalan2 ([email protected]), Shu-mei Li3, Weiwen Zhang3, J. Chris Detter4, Paul Richardson4, Margie Romine3, and Fred Brockman3 1Bioinformatics Group, Argonne National Laboratory; 2Computational Biology and Bioinformatics, Pacific Northwest National Labora...
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The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata des...
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The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence data...
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IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG's comparative data analysis tools extended to handle metagenome data, together with ...
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ژورنال
عنوان ژورنال: mSystems
سال: 2021
ISSN: 2379-5077
DOI: 10.1128/msystems.00804-20